From 5b9eacae66c9a249e3a5490f2e5a9c12059d6f3e Mon Sep 17 00:00:00 2001
From: Adam Rauch <adam@labkey.com>
Date: Wed, 7 Oct 2026 09:26:21 -0700
Subject: [PATCH] Upgrade Tika 3.3.2 -> 4.1.0

---
 .../org/labkey/specimen/pipeline/FileAnalysisSpecimenTask.java | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/specimen/src/org/labkey/specimen/pipeline/FileAnalysisSpecimenTask.java b/specimen/src/org/labkey/specimen/pipeline/FileAnalysisSpecimenTask.java
index 5427de29..62be50bf 100644
--- a/specimen/src/org/labkey/specimen/pipeline/FileAnalysisSpecimenTask.java
+++ b/specimen/src/org/labkey/specimen/pipeline/FileAnalysisSpecimenTask.java
@@ -20,6 +20,7 @@
 import org.apache.tika.io.TikaInputStream;
 import org.apache.tika.metadata.Metadata;
 import org.apache.tika.mime.MediaType;
+import org.apache.tika.parser.ParseContext;
 import org.jetbrains.annotations.Nullable;
 import org.labkey.api.admin.ImportException;
 import org.labkey.api.admin.PipelineJobLoggerGetter;
@@ -97,7 +98,7 @@ public VirtualFile getSpecimenDir(PipelineJob job, SimpleStudyImportContext ctx,
                 {
                     // determine the type of file being imported
                     DefaultDetector detector = new DefaultDetector();
-                    MediaType type = detector.detect(is, new Metadata());
+                    MediaType type = detector.detect(is, new Metadata(), new ParseContext());
 
                     if (MediaType.APPLICATION_ZIP.equals(type))
                     {