From ac4df3cd07c2a5272b16dffd4aefda4460c0ba6f Mon Sep 17 00:00:00 2001
From: Marty Pradere <martyp@labkey.com>
Date: Sun, 11 Oct 2026 13:57:04 -0600
Subject: [PATCH] Remove ETL-only logic from protocolAssignment trigger

---
 .../queries/study/protocolAssignment.js       | 122 ------------------
 1 file changed, 122 deletions(-)

diff --git a/nbri_ehr/resources/queries/study/protocolAssignment.js b/nbri_ehr/resources/queries/study/protocolAssignment.js
index cf6fde2..7d6bd38 100644
--- a/nbri_ehr/resources/queries/study/protocolAssignment.js
+++ b/nbri_ehr/resources/queries/study/protocolAssignment.js
@@ -4,125 +4,3 @@
  * Licensed under the Apache License, Version 2.0: http://www.apache.org/licenses/LICENSE-2.0
  */
 require("ehr/triggers").initScript(this);
-var protocolData = {};
-var prevAnimalId;
-var prevDate;
-
-var missing = [];
-
-var count = 0;
-
-function getLastAssignment(id){
-    var batchLastDate;
-
-    LABKEY.Query.selectRows({
-        schemaName: 'study',
-        queryName: 'protocolAssignment',
-        columns: 'Id,date',
-        filterArray: [LABKEY.Filter.create('Id', id)],
-        sort: '-date',
-        success: function (results) {
-            if (results.rows.length) {
-                batchLastDate = results.rows[0].date;
-            }
-        },
-        scope: this
-    });
-
-    return batchLastDate;
-}
-
-function onInit(event, helper){
-    
-    if (helper.isETL()) {
-        LABKEY.Query.selectRows({
-            schemaName: 'ehr',
-            queryName: 'protocol',
-            columns: 'title,objectid',
-            success: function (results) {
-                if (results.rows.length) {
-                    for (var i = 0; i < results.rows.length; i++) {
-                        let rec = results.rows[i];
-                        protocolData[rec.objectid] = rec.title;
-                    }
-                }
-            },
-            scope: this
-        });
-    }
-}
-
-EHR.Server.TriggerManager.registerHandlerForQuery(EHR.Server.TriggerManager.Events.BEFORE_INSERT, 'study', 'protocolAssignment', function (helper, scriptErrors, row, oldRow) {
-
-    if (helper.isETL()) {
-        var isTransfer = prevAnimalId === row.Id;
-
-        if (row.remark) {
-            var remarkTextArr = row.remark.split(':');
-            var toProtocol = remarkTextArr[3].split(' (')[0]; // Get "To Protocol:" value without segment
-            var protocolId;
-
-            protocolId = getProtocolIdByName(toProtocol);
-            if (!protocolId || protocolId === 'undefined') {
-                if (missing.indexOf(toProtocol) === -1)
-                    missing.push(toProtocol)
-            }
-            else {
-                row.protocol = protocolId;
-            }
-            if (isTransfer) {
-                if (row.enddate) {
-                    // End date will initially have animal death/departure. Override if the transfer is older.
-                    var death = new Date(row.enddate);
-                    var prev = new Date(prevDate);
-
-                    // Sanity check
-                    if (prev < death) {
-                        row.enddate = prevDate;
-                    }
-                }
-                else {
-                    row.enddate = prevDate;
-                }
-            }
-            else if (count === 0) {
-                // This handles batch boundary row for full truncate ETL, which is the only ETL setup for this currently.
-                // Gets previous date from db for first row in batch
-                var batchLastDate = getLastAssignment(row.Id);
-                if (batchLastDate) {
-                    row.enddate = batchLastDate;
-                }
-            }
-
-            if (row.enddate === 'undefined') {
-                console.log("end date not found for animal event - " + row.animalEventId);
-            }
-        }
-
-        prevAnimalId = row.Id;
-        prevDate = row.date;
-        count++;
-    }
-
-});
-
-
-function getProtocolIdByName(protocolName) {
-    var protocols = Object.keys(protocolData);
-
-    // Search protocols for exact case-insensitive match
-    for (var i = 0; i< protocols.length; i++) {
-        var pName = protocolData[protocols[i]] ;
-        if (pName && protocolName.trim().toLowerCase() === pName.toString().toLowerCase()) {
-            return protocols[i];
-        }
-    }
-
-    // If exact match not found, search for partial match at beginning of protocol
-    for (i = 0; i< protocols.length; i++) {
-        pName = protocolData[protocols[i]] ;
-        if (pName && protocolName.trim().toLowerCase().indexOf(pName.toString().toLowerCase()) === 0) {
-            return protocols[i];
-        }
-    }
-}