Bioinformtics-Problem-Solving/PatternCount function at master · MTarekM/Bioinformtics-Problem-Solving · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
# Copy your PatternCount function below here
def patternCount(text, pattern):
	count = 0
	for i in range(len(text) - len(pattern)+1):
		if (text[i:i+len(pattern)] == pattern):
			count += 1
	return count

# On the following line, create a variable called Text that is equal to the oriC region from T petrophila

text = 'AACTCTATACCTCCTTTTTGTCGAATTTGTGTGATTTATAGAGAAAATCTTATTAACTGAAACTAAAATGGTAGGTTTGGTGGTAGGTTTTGTGTACATTTTGTAGTATCTGATTTTTAATTACATACCGTATATTGTATTAAATTGACGAACAATTGCATGGAATTGAATATATGCAAAACAAACCTACCACCAAACTCTGTATTGACCATTTTAGGACAACTTCAGGGTGGTAGGTTTCTGAAGCTCTCATCAATAGACTATTTTAGTCTTTACAAACAATATTACCGTTCAGATTCAAGATTCTACAACGCTGTTTTAATGGGCGTTGCAGAAAACTTACCACCTAAAATCCAGTATCCAAGCCGATTTCAGAGAAACCTACCACTTACCTACCACTTACCTACCACCCGGGTGGTAAGTTGCAGACATTATTAAAAACCTCATCAGAAGCTTGTTCAAAAATTTCAATACTCGAAACCTACCACCTGCGTCCCCTATTATTTACTACTACTAATAATAGCAGTATAATTGATCTGA'
# On the following line, create a variable called count_1 that is equal to the number of times
# that "ATGATCAAG" occurs in Text.
p1 = 'ATGATCAAG'
# On the following line, create a variable called count_2 that is equal to the number of times
# that "CTTGATCAT" occurs in Text.
p2 = 'CTTGATCAT'


# Finally, print the sum of count_1 and count_2countp = "TGT"

count_1 = print(patternCount(text,p1))
count_2 = print(patternCount(text,p2))