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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 398 164

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 27 16

Repositories

Showing 10 of 517 repositories
  • serra Public

    A multi-material meshing library written in Rust

    AllenInstitute/serra's past year of commit activity
    Python 9 MIT 0 1 0 Updated Oct 1, 2026
  • npc_lims Public

    Tools to fetch and update paths, metadata and state for Mindscope Neuropixels sessions, in the cloud.

    AllenInstitute/npc_lims's past year of commit activity
    Python 0 MIT 1 4 0 Updated Oct 1, 2026
  • ConnectsCommonConnectivity Public

    A repository to organize data models and code for creating a pilot common connectivity matrix for BRAIN CONNECTS

    AllenInstitute/ConnectsCommonConnectivity's past year of commit activity
    Jupyter Notebook 4 MIT 1 25 (1 issue needs help) 2 Updated Oct 1, 2026
  • npc_sync Public

    Repackaging of AllenSDK.SyncDataset with extra functionality, compatible with data in the cloud.

    AllenInstitute/npc_sync's past year of commit activity
    Python 0 MIT 0 0 1 Updated Sep 30, 2026
  • biodata-schema Public

    Complete and accurate metadata for bioscience

    AllenInstitute/biodata-schema's past year of commit activity
    Python 1 MIT 0 68 4 Updated Sep 30, 2026
  • neuroglancer Public Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    AllenInstitute/neuroglancer's past year of commit activity
    TypeScript 0 Apache-2.0 419 0 1 Updated Sep 30, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES's past year of commit activity
    IGOR Pro 30 11 287 5 Updated Sep 30, 2026
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem's past year of commit activity
    HTML 5 4 0 0 Updated Sep 30, 2026
  • AutoPumping Public

    A Python package for automating high-vacuum pumping systems.

    AllenInstitute/AutoPumping's past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 30, 2026
  • biofile-finder Public

    An open-use web application created for easy access, collaboration, and sharing of datasets through rich metadata search, filter, sort, and direct viewing in common industry applications or in our web-based 3D Volume Viewer.

    AllenInstitute/biofile-finder's past year of commit activity
    TypeScript 22 BSD-3-Clause 10 56 13 Updated Sep 30, 2026
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