Issues

• Include documentation on how to set up a configuration file

  HelikarLab/FastqToGeneCounts#73 · Filter by author sm1216 opened on Nov 16, 2023

• Test single cell alignment against known results

  priority:normalstate:opensubsystem:snakemakesubsystem:teststype:feature
  HelikarLab/FastqToGeneCounts#49 · Filter by author JoshLoecker opened on Jan 3, 2023
  

• Include single-cell alignment into rule star_align

  priority:normalstate:opentype:feature
  HelikarLab/FastqToGeneCounts#48 · Filter by author JoshLoecker opened on Jan 3, 2023
  

• Convert all "S" instances (single-end) into "SE" to reduce confusion when using single-cell abbreviations in the future

  priority:normalstate:in-progresssubsystem:snakemaketype:feature
  HelikarLab/FastqToGeneCounts#47 · Filter by author JoshLoecker opened on Jan 3, 2023
  

• Trimming leaves adapter sequences longer than 90 base pairs

  priority:normalstate:in-progresssubsystem:snakemaketype:bug
  HelikarLab/FastqToGeneCounts#45 · Filter by author JoshLoecker opened on Dec 7, 2022

• MultiQC Extra Folderes

  priority:minorstate:opensubsystem:snakemaketype:cosmetics
  HelikarLab/FastqToGeneCounts#33 · Filter by author JoshLoecker opened on Oct 19, 2022

• Installation Script

  priority:normalstate:opensubsystem:othertype:featuretype:usability
  HelikarLab/FastqToGeneCounts#5 · Filter by author JoshLoecker opened on Sep 6, 2022