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Merge discvr-26.3 to develop - #421

Merged

bbimber merged 23 commits into

developfrom

fb_merge_26.3_to_develop

Mar 25, 2026

Commits on Feb 7, 2026
- Respect custom locations for sequence import
  bbimber
  committed
  49cf837
Commits on Feb 8, 2026
- Allow long-running upgrade code to run separate from update
  bbimber
  committed
  fd9b12d
- Allow long-running upgrade code to run separate from update
  bbimber
  committed
  57666c1
- Remove older components
  bbimber
  committed
  dd372e1
- Switch sequence migration code to pipeline job to allow to run in background
  bbimber
  committed
  8fe4edb
Commits on Feb 10, 2026
- Improve cancellation behavior
  bbimber
  committed
  1e97a42
- Add ability to delete unused NT records directly
  bbimber
  committed
  0a7acd2
- pryr -> lobstr
  bbimber
  committed
  769d0da
- Clean up empty folders in SequenceAnalysisMaintenanceTask
  bbimber
  committed
  d125afe
Commits on Feb 14, 2026
- Restore original NT sequence location
  bbimber
  committed
  4655ca9
Commits on Feb 21, 2026
- Bugfix to SequenceAnalysisMaintenanceTask and improve behavior of StudyFilerType
  bbimber
  committed
  695ff7c
- Bugfix to SequenceAnalysisMaintenanceTask
  bbimber
  committed
  0f7b294
Commits on Feb 24, 2026
- SVGRenderer replacement and jbrowse version update (#380)
  
  authored
  9d3008c
Commits on Mar 2, 2026
- Support minFractionCloneActivated
  bbimber
  committed
  d356f84
Commits on Mar 3, 2026
- Major refactor of underlying SBT SQL queries (#381)
  bbimber
  authored
  7306b2d
Commits on Mar 9, 2026
- More automatic capture of TCR updates
  bbimber
  committed
  8b67f38
Commits on Mar 14, 2026
- Improve handling of single cell pipeline when no new output is created
  bbimber
  committed
  0e3c514
Commits on Mar 16, 2026
- Add GEX/SRA link
  bbimber
  committed
  3ee1181
Commits on Mar 21, 2026
- Allow vireo to use reference VCF for cellsnp-lite alone
  bbimber
  committed
  4e2e131
Commits on Mar 23, 2026
- Wait for canvas to load instead of "Loading..." messages to disappear (#382)
  
  hextraza
  and
  Sebastian Benjamin
  authored
  defa661
- Merge discvr-25.11 to discvr-26.3
  bbimber
  committed
  70a27c0
- Merge pull request #383 from BimberLab/26.3_fb_merge
  bbimber
  authored
  563cb17
Commits on Mar 24, 2026
- Merge discvr-26.3 to develop
  bbimber
  committed
  e448142

Commits

Commits on Feb 7, 2026

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Commits on Feb 10, 2026

Commits on Feb 14, 2026

Commits on Feb 21, 2026

Commits on Feb 24, 2026

Commits on Mar 2, 2026

Commits on Mar 3, 2026

Commits on Mar 9, 2026

Commits on Mar 14, 2026

Commits on Mar 16, 2026

Commits on Mar 21, 2026

Commits on Mar 23, 2026

Commits on Mar 24, 2026