[bot] Fast-forward for 26.7.12

onprc_ehr/resources/etls/SLAWeaning.xml

@@ -20,9 +20,11 @@
     </transforms>
 
     <schedule>
-        <!-- Runs daily at 11pm -->
-        <cron expression="0 0 23 * * ?"/>
-<!--        <poll interval="15m" />&lt;!&ndash; For testing only - runs every 15 mins &ndash;&gt;-->
+        <!-- Runs daily at 4:30 AM -->
+        <cron expression="0 30 04 * * ?"/>
+
+        <!-- For testing only - runs every 15 mins -->
+        <!-- <poll interval="15m" /> -->
     </schedule>
 
 </etl>

onprc_ehr/resources/etls/TB_Test_Historical_Process.xml

@@ -0,0 +1,38 @@
+<?xml version="1.0" encoding="UTF-8"?>
+
+<etl xmlns="http://labkey.org/etl/xml">
+
+    <name>TB_Test_Historical_Record_Updates</name>
+
+    <description>Transfer Tb Test temp tables into study Clinical Observation values</description>
+
+
+    <transforms>
+
+        <transform id="step1">
+
+            <description>Transfer to EHR Tasks</description>
+
+            <source schemaName="onprc_ehr" queryName="Observation_Historical_EHRTasks"/>
+
+            <destination schemaName="EHR" queryName="tasks"  />
+
+        </transform>
+
+        <transform id="step2">
+
+            <description>Transfer temp table data to study clinical observation </description>
+
+            <source schemaName="onprc_ehr" queryName="Temp_Clinical_Observations_Historical"/>
+
+            <destination schemaName="study" queryName="clinical_observations" />
+
+        </transform>
+
+    </transforms>
+
+</etl>
+
+
+
+

onprc_ehr/resources/queries/study/DVMAlertForAlopeciaCases.sql

@@ -0,0 +1,69 @@
+/* Added by Kollil 09/22/2025
+    When BSU creates a case AND scores the alopecia at either 4 or 5 (only those scores)
+    THEN the vet assigned to that animal should receive an alert.
+    Show open cases in last 7 days
+Refer to old tkt # 12523, new ticket # 15401
+*/
+SELECT
+    co.Id,
+    co.date AS AlertObservationDate,
+    co.observation AS AlopeciaScore,
+    co.performedby,
+    CASE
+        WHEN co.enteredSincevetReview = 1 THEN 'true'
+        WHEN co.enteredSincevetReview = 0 THEN 'false'
+        ELSE NULL
+    END AS enteredSincevetReview,
+    co.Id.assignedVet.AssignedVet AS AssignedVet,
+    c.BehaviorCaseOpenDate,
+    TIMESTAMPADD(SQL_TSI_DAY, 7, c.BehaviorCaseOpenDate) AS VetReviewDueDate
+FROM study.clinical_observations co
+    INNER JOIN study.demographics d
+        ON d.Id = co.Id
+        INNER JOIN (
+    SELECT
+        x.Id,
+        MAX(x.date) AS BehaviorCaseOpenDate
+    FROM study.Cases x
+    WHERE x.category = 'Behavior'
+      AND x.allProblemCategories = 'Behavioral: Alopecia'
+      AND x.enddate IS NULL
+      AND x.date >= TIMESTAMPADD(SQL_TSI_DAY, -7, NOW())
+    GROUP BY x.Id
+    ) c
+    ON c.Id = co.Id
+WHERE co.category = 'Alopecia Score'
+  AND co.observation IN ('4', '5')
+  AND d.calculated_status = 'Alive'
+
+    /* Only the first 4/5 in a streak */
+  AND NOT EXISTS (
+    SELECT 1
+    FROM study.clinical_observations prev
+    WHERE prev.Id = co.Id
+      AND prev.category = 'Alopecia Score'
+      AND prev.observation IN ('4', '5')
+      AND prev.date < co.date
+      AND prev.date >
+        COALESCE(
+              (
+                  SELECT MAX(reset.date)
+                  FROM study.clinical_observations reset
+                  WHERE reset.Id = co.Id
+                    AND reset.category = 'Alopecia Score'
+                    AND reset.observation IN ('0', '1', '2', '3')
+                    AND reset.date < co.date
+              ),
+              {ts '1900-01-01 00:00:00'}
+        )
+)
+    /* Remove old streaks that later returned to 0-3 */
+  AND NOT EXISTS (
+    SELECT 1
+    FROM study.clinical_observations laterReset
+    WHERE laterReset.Id = co.Id
+      AND laterReset.category = 'Alopecia Score'
+      AND laterReset.observation IN ('0', '1', '2', '3')
+      AND laterReset.date > co.date
+)
+ORDER BY co.Id ASC

onprc_ehr/resources/queries/study/DVMAlertforAlopeciaCases.query.xml

@@ -0,0 +1,41 @@
+<query xmlns="http://labkey.org/data/xml/query">
+    <metadata>
+        <tables xmlns="http://labkey.org/data/xml">
+            <table tableName="DVMAlertforAlopeciaCases" tableDbType="NOT_IN_DB">
+                <tableTitle>New severe alopecia cases with a score of 4 or 5 requires Vet review</tableTitle>
+                <columns>
+                    <column columnName="Id">
+                        <isHidden>false</isHidden>
+                        <fk>
+                            <fkDbSchema>study</fkDbSchema>
+                            <fkTable>animal</fkTable>
+                            <fkColumnName>id</fkColumnName>
+                        </fk>
+                    </column>
+                    <column columnName="AlertObservationDate">
+                        <isHidden>false</isHidden>
+                        <columnTitle>Alert Observation Date</columnTitle>
+                    </column>
+                    <column columnName="AlopeciaScore">
+                        <columnTitle>Alopecia Score</columnTitle>
+                    </column>
+                    <column columnName="performedby">
+                        <columnTitle>Performed By</columnTitle>
+                    </column>
+                    <column columnName="enteredSincevetReview">
+                        <columnTitle>Entered Since Last Vet Review?</columnTitle>
+                    </column>
+                    <column columnName="AssignedVet">
+                        <columnTitle>Assigned Vet</columnTitle>
+                    </column>
+                    <column columnName="BehaviorCaseOpenDate">
+                        <columnTitle>Behavior Case Open Date</columnTitle>
+                    </column>
+                    <column columnName="VetReviewDueDate">
+                        <columnTitle>Vet Review Due Date</columnTitle>
+                    </column>
+                </columns>
+            </table>
+        </tables>
+    </metadata>
+</query>