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@NationalGenomicsInfrastructure

National Genomics Infrastructure

The Swedish National Genomics Infrastructure (NGI), a technology platform at SciLifeLab, serving primarily Swedish academia.

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  1. miarka-provision miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    Jinja 1 16

  2. genomics-status genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    JavaScript 12 22

  3. ngi_reports ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    Python 5 14

  4. MultiQC_NGI MultiQC_NGI Public

    MultiQC plugin for the National Genomics Infrastructure in Stockholm, Sweden.

    Python 4 11

  5. taca-ngi-pipeline taca-ngi-pipeline Public

    Forked from b97pla/taca-ngi-pipeline

    A TACA plugin adding functionality relevant for the ngi_pipeline

    Python 3 13

  6. TACA TACA Public

    Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    Python 14 17

Repositories

Showing 10 of 58 repositories
  • checklists_generator Public

    Python script to dynamically generate the bioinfo production checklists for QC, Delivery and Close of NGI sequencing projects

    NationalGenomicsInfrastructure/checklists_generator's past year of commit activity
    Python 2 MIT 3 0 0 Updated Sep 28, 2026
  • ngisweden.se-publications Public

    A GitHub action to fetch a random selection of publications to display on the website

    NationalGenomicsInfrastructure/ngisweden.se-publications's past year of commit activity
    HTML 0 MIT 0 0 8 Updated Sep 28, 2026
  • ngi-firn Public

    A laboratory freezer inventory management system created with Nuxt4, Vue and UnaUI.

    NationalGenomicsInfrastructure/ngi-firn's past year of commit activity
    Vue 2 MIT 2 0 0 Updated Sep 26, 2026
  • scilifelab_epps Public Forked from Galithil/scilifelab_epps

    A collection of Genologics Clarity LIMS EPPs used at Scilifelab.

    NationalGenomicsInfrastructure/scilifelab_epps's past year of commit activity
    Python 6 16 0 2 Updated Sep 25, 2026
  • genomics-status Public

    Tornado server for tracking samples at NGI Stockholm

    NationalGenomicsInfrastructure/genomics-status's past year of commit activity
    JavaScript 12 MIT 22 0 4 Updated Sep 24, 2026
  • miarka-provision Public

    Ansible playbooks for provisioning NGI cluster Miarka

    NationalGenomicsInfrastructure/miarka-provision's past year of commit activity
    Jinja 1 16 10 3 Updated Sep 24, 2026
  • TACA Public Forked from guillermo-carrasco/TACA

    Tool for the Automation of Cleanup and Analyses: tools for projects and data management at NGI Stockholm

    NationalGenomicsInfrastructure/TACA's past year of commit activity
    Python 14 MIT 20 3 1 Updated Sep 23, 2026
  • ngi_reports Public

    Code to generate reports for use by the NGI in SciLifeLab

    NationalGenomicsInfrastructure/ngi_reports's past year of commit activity
    Python 5 MIT 14 0 0 Updated Sep 22, 2026
  • flowcell_parser Public

    Collection of python scripts to parse Illumina (demux with bcl2fastq v2.17+) output

    NationalGenomicsInfrastructure/flowcell_parser's past year of commit activity
    Python 7 MIT 18 1 0 Updated Sep 18, 2026
  • BioMate Public Forked from fagostini/BioMate

    A collection of scripts and utility tools for everyday processing of biological data

    NationalGenomicsInfrastructure/BioMate's past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 18, 2026
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