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B6: OMERO is_dir/is_file (0.6.1); delete orphaned docs validation logs - #38

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Oct 12, 2026
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trissim merged 2 commits into
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@trissim trissim commented Oct 11, 2026

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Part of OpenHCS surface B6 (main's CI green, OpenHCSDev/openhcs#1195).

Agent run records sat in this repository's Sphinx tree outside any toctree, so the OpenHCS Documentation workflow's sphinx -W build of these docs failed. They are deleted; they remain in git history (owner decision Q4: validation logs nothing links to are deleted).

🤖 Generated with Claude Code

input_preparation_{installed,parent}_20261001.rst and metadata_namespace_327.rst
were run records linked from no toctree; Sphinx -W failed on them
(toc.not_included, short underlines). They remain in git history.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Copilot AI balanced review requested due to automatic review settings October 11, 2026 07:25

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trissim added a commit to OpenHCSDev/openhcs that referenced this pull request Oct 11, 2026
…logs

Lockstep with OpenHCSDev/PolyStore#38 and OpenHCSDev/PyQT-reactive#21: the
Documentation workflow's sphinx -W builds of both failed on run records in no
toctree.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
OpenHCS's pattern engine asks FileManager.is_dir of the input directory before
listing; OMEROLocalBackend had no is_dir, so every OMERO execution failed with
StorageResolutionError. A valid OMERO path is a directory unless it names a
file by suffix, matching exists().

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
@trissim trissim changed the title Delete agent validation logs from the docs tree B6: OMERO is_dir/is_file (0.6.1); delete orphaned docs validation logs Oct 11, 2026
trissim added a commit to OpenHCSDev/openhcs that referenced this pull request Oct 11, 2026
Every OMERO execution failed at the pattern engine's is_dir check with
'OMEROLocalBackend object has no attribute is_dir'. Lockstep with
OpenHCSDev/PolyStore#38; release-readiness needs v0.6.1 tagged.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
@trissim
trissim merged commit d367c60 into main Oct 12, 2026
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