Issues

• About Diabimmune dataset

  RasmussenLab/phamb#63 · Filter by author fanwenjing996 opened on Jul 19, 2025

• category of viruses identified by PHAMB ?

  RasmussenLab/phamb#61 · Filter by author ChaoXianSen opened on Jan 26, 2024

• Can PHAMB be used directly for Virome analysis (enrichment of viral particles followed by sequencing)

  RasmussenLab/phamb#60 · Filter by author 1023011930 opened on Jan 6, 2024
  2

• interpret the results of RF model

  RasmussenLab/phamb#59 · Filter by author ChaoXianSen opened on Dec 28, 2023

• How to Run - not in parallel - quick and dirty

  RasmussenLab/phamb#58 · Filter by author SergeyBaikal opened on Dec 22, 2023
  1

• how to get the file 'clusters.tsv' ?

  RasmussenLab/phamb#56 · Filter by author ChaoXianSen opened on Oct 15, 2023

• 'run_RF.py' operation problem

  RasmussenLab/phamb#55 · Filter by author ChaoXianSen opened on Oct 13, 2023
  1

• Binning question, how to use vamb?

  RasmussenLab/phamb#54 · Filter by author ChaoXianSen opened on Oct 10, 2023
  7

• The predicted 'viral' number in 'vambbins_RF_predictions.txt' is inconsistent with the actual number in 'vamb_bins.1.fna'?

  RasmussenLab/phamb#53 · Filter by author ChaoXianSen opened on Oct 8, 2023
  1

• how to evaluate the bin-annotations?

  RasmussenLab/phamb#51 · Filter by author ChaoXianSen opened on Oct 6, 2023
  1

• modified header names in PHAMB

  RasmussenLab/phamb#41 · Filter by author ShailNair opened on Jul 7, 2022
  4

• Question about the workflow

  RasmussenLab/phamb#40 · Filter by author Nianzhen-GU opened on Jul 5, 2022

• Including micomplete Arch131 and/or VIBRANT annotations?

  RasmussenLab/phamb#39 · Filter by author kellifeeser opened on May 18, 2022
  1

• Suggestion : add checkv step beforehand to remove complete genomes

  RasmussenLab/phamb#34 · Filter by author michoug opened on Mar 25, 2022
  2