Issues

• Option to remove sample names and bin-split character from the output bin files

  RasmussenLab/vamb#471 · Filter by author prototaxites opened on Sep 8, 2026

• Taxnometer

  RasmussenLab/vamb#465 · Filter by author oooo111 opened on Jan 8, 2026

• Missing taxa

  RasmussenLab/vamb#464 · Filter by author ntromas opened on Nov 27, 2025
  3

• Different Bin Counts

  RasmussenLab/vamb#459 · Filter by author beaPhD opened on Nov 3, 2025
  3

• Inquiry about rownames in bam generated abundance.npz

  RasmussenLab/vamb#448 · Filter by author Zjx01 opened on Jun 16, 2025

• TaxVamb and eukaryotes

  RasmussenLab/vamb#445 · Filter by author michoug opened on May 27, 2025

• [Feature Request] - Relax dependency versions

  enhancement
  RasmussenLab/vamb#435 · Filter by author jolespin opened on Apr 7, 2025
  3

• Adjust compaction frequency when clustering

  Needs benchmark
  RasmussenLab/vamb#429 · Filter by author jakobnissen opened on Mar 17, 2025

• running error of create_fasta.py

  Needs more info
  RasmussenLab/vamb#418 · Filter by author zzsunday opened on Mar 11, 2025
  13

• Feature request: Ability to run BAM parsing, fitting and clustering independently

  RasmussenLab/vamb#414 · Filter by author shiraz-shah opened on Mar 7, 2025
  1

• Question: Custom clustering cutoff?

  investigation
  RasmussenLab/vamb#406 · Filter by author shiraz-shah opened on Mar 4, 2025
  4

• Question: Contig kmer counts instead of mapping??

  investigation
  RasmussenLab/vamb#405 · Filter by author shiraz-shah opened on Mar 4, 2025
  2

• Out of cuda memory on 24 GB gpu and 200-sample data set

  Needs more info
  RasmussenLab/vamb#401 · Filter by author shiraz-shah opened on Mar 2, 2025
  4

• das_tool for handling avamb multi-bin contigs?

  investigation
  RasmussenLab/vamb#381 · Filter by author aistBMRG opened on Dec 29, 2024
  2

• multisplit and or single-sample

  investigation
  RasmussenLab/vamb#368 · Filter by author sheaster opened on Nov 13, 2024
  3

• Help needed for RuntimeError: size of tensor a must match the size of tensor b

  Needs more info
  RasmussenLab/vamb#364 · Filter by author MapleHe opened on Oct 3, 2024
  3

• Do not store data multiple times in memory if possible

  RasmussenLab/vamb#354 · Filter by author jakobnissen opened on Aug 28, 2024

• ValueError: Length of TNFs and length of RPKM does not match. Verify the inputs

  RasmussenLab/vamb#352 · Filter by author shaman-narayanasamy opened on Aug 7, 2024
  3

• How can we know which contig belongs to the bins

  RasmussenLab/vamb#351 · Filter by author StickHu opened on Jul 31, 2024
  2

• Where does the variance come from?

  RasmussenLab/vamb#331 · Filter by author jakobnissen opened on Jul 3, 2024
  

• Test various abundance estimation parameters

  RasmussenLab/vamb#330 · Filter by author jakobnissen opened on Jul 2, 2024
  3

  

• A file to map the bins and samples

  RasmussenLab/vamb#320 · Filter by author WeimingWHu opened on May 10, 2024
  1

• write_clusters_from_nc_folders exit with error on SLURM but ran successfully on command line

  RasmussenLab/vamb#319 · Filter by author WeimingWHu opened on May 10, 2024
  1

• Missing output files

  RasmussenLab/vamb#316 · Filter by author B1991ing opened on Apr 28, 2024
  1

• Error during "creating z y v clusters from the final set of bins" avamb workflow

  RasmussenLab/vamb#297 · Filter by author eperezv opened on Mar 10, 2024
  10