Skip to content
@TheDongLab

Dong Lab

Code repository for Dong Lab

Popular repositories Loading

  1. enHunter enHunter Public

    A pipeline to identify enhancer RNAs (eRNAs) from total RNA-seq data

    Shell 4

  2. EVscope EVscope Public

    EVscope: A Modular Pipeline for EV-Enriched Total RNA-seq QC, EM-Weighted Coverage Profiling, and RNA-Biotype Annotation

    Python 2 1

  3. VizIt VizIt Public

    VizIt! - An open-source toolkit for visualizing your single-cell multi-omics data online easily

    HTML 2

  4. AtlasForge AtlasForge Public

    AtlasForge is an open-source system that generates an interactive web atlas for any gene family through automated data retrieval and analysis

    TypeScript 1

  5. onboarding onboarding Public

    Forked from greenelab/onboarding

    Onboarding materials for the Dong Lab

  6. SpatialTranscriptomics SpatialTranscriptomics Public

    R 1

Repositories

Showing 10 of 12 repositories
  • AtlasForge Public

    AtlasForge is an open-source system that generates an interactive web atlas for any gene family through automated data retrieval and analysis

    TheDongLab/AtlasForge's past year of commit activity
    TypeScript 1 Apache-2.0 0 0 0 Updated Oct 22, 2026
  • BRAINcode Public Forked from sterding/BRAINcode

    Script and pipeline for BRAINcode project

    TheDongLab/BRAINcode's past year of commit activity
    Shell 0 5 0 0 Updated Oct 22, 2026
  • EVscope Public

    EVscope: A Modular Pipeline for EV-Enriched Total RNA-seq QC, EM-Weighted Coverage Profiling, and RNA-Biotype Annotation

    TheDongLab/EVscope's past year of commit activity
    Python 2 MIT 1 0 0 Updated Oct 20, 2026
  • ReRx Public

    ReRx is a drug repurposing toolkit that identifies disease-protective or disease-prone drugs by analyzing medication usage patterns across multiple cohorts.

    TheDongLab/ReRx's past year of commit activity
    R 0 MIT 0 0 1 Updated Oct 13, 2026
  • PD-Midbrain-Multiome Public

    Analysis code for single-nucleus multiomic profiling of the human midbrain in Parkinson’s disease.

    TheDongLab/PD-Midbrain-Multiome's past year of commit activity
    R 0 MIT 0 0 0 Updated Sep 18, 2026
  • VizIt Public

    VizIt! - An open-source toolkit for visualizing your single-cell multi-omics data online easily

    TheDongLab/VizIt's past year of commit activity
    HTML 2 GPL-3.0 0 0 0 Updated Sep 8, 2026
  • AI2AMP-PD Public

    Transcriptional pathobiology and multi-omics predictors for Parkinson's disease

    TheDongLab/AI2AMP-PD's past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 31, 2026
  • onboarding Public Forked from greenelab/onboarding

    Onboarding materials for the Dong Lab

    TheDongLab/onboarding's past year of commit activity
    0 CC0-1.0 24 0 0 Updated Apr 27, 2026
  • PD5D_UCSC_trackHub Public

    This repository is for trackhub which contains the information for ATAC-seq and RNA-seq

    TheDongLab/PD5D_UCSC_trackHub's past year of commit activity
    HTML 0 MIT 0 0 0 Updated Mar 27, 2026
  • brainPAS Public
    TheDongLab/brainPAS's past year of commit activity
    Python 0 0 0 0 Updated Oct 24, 2024
View all repositories

Top languages

Loading…

Most used topics

Loading…