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It is me trying.
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It is me trying.

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@LennonLab @GaTechBrownLab

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canankarakoc/README.md

Canan Karakoç

Evolutionary ecologist working with microbes. I combine experiments, data synthesis and eco-evolutionary theory to understand, and ultimately predict, how populations and communities persist and adapt as their environment changes. Research scholar in the Brown Lab at Georgia Tech, supported by a Cystic Fibrosis Foundation Postdoctoral Fellowship.

Research themes

  • Energy: what it costs cells to persist, from the ATP budget of making a spore to evolution during 1,000 days of starvation.
  • Predictability: when infection outcomes can be forecast, from host health and survival to the accelerating risk of death across host-pathogen systems.
  • Noise: how environmental fluctuations and sampling noise shape host-phage dynamics and what routine resistance testing can reveal.

Selected repositories

Theme Repository What it holds
Energy cost_of_spore Energetic cost of sporulation in ATP from genome, transcriptome and proteome data, with models of sporulation efficiency
Energy starvation 1,000 days of Bacillus subtilis without added resources: population dynamics, genome sequencing and phenotyping
Predictability Galleria_Survival Host health, infection history and survival in Galleria mellonella infected with Pseudomonas aeruginosa
Predictability GoldsteinGameTheory Host-pathogen coevolution of conditional response rules versus fixed traits
Predictability wasteWaterVirus Whether virus loads in sewage track and lead reported cases (ARIMA, VAR, cross-correlation)
Teaching teaching-materials Activities, worksheets and R scripts from four courses, 2018-2025

Website · Google Scholar · ORCID · Bluesky

Popular repositories Loading

  1. r_package_EDMhelper r_package_EDMhelper Public

    Development folder for EDMhelper

    R 3

  2. Galleria_Survival Galleria_Survival Public

    Forked from GaTechBrownLab/Galleria_Survival

    Analysis for the experiments with Galleria-Pseudomonas model system.

    R 1

  3. cost_of_spore cost_of_spore Public

    Forked from LennonLab/cost_of_spore

    Here we quantified the energetic cost of sporulation in units of ATP by integrating time-resolved genome, transcriptome, and proteome profiles. We incorporated our estimates into mechanistic models…

    R 1

  4. GoldsteinGameTheory-fork GoldsteinGameTheory-fork Public

    Forked from GaTechBrownLab/GoldsteinGameTheory

    Reannimation of Goldstein model/simulations.

    R 1

  5. starvation starvation Public

    Forked from LennonLab/starvation

    Reviewed/reanimated SporeMut repo.

    R 1

  6. QB-2021 QB-2021 Public

    Forked from QuantitativeBiodiversity/QB-2021