Python CQA

python-cqa.yml

301 workflow runs

Make the shared RLE sequence limit configurable
requires action with the application:
Python CQA#2079:Pull request#660synchronizebyShubham-Padkonde
Shubham-Padkonde:feat/configurable-rle-sequence-limit
Oct 16, 2026Action required
Make the shared RLE sequence limit configurable
requires action with the application:
Python CQA#2078:Pull request#660synchronizebyShubham-Padkonde
Shubham-Padkonde:feat/configurable-rle-sequence-limit
Oct 16, 2026Action required
fix: validate reference allele stated in HGVS expressions
completed successfully:
Python CQA#2077:Pull request#655synchronizebydeveloper-rpai
developer-rpai:fix-364-hgvs-ref-validation
Oct 7, 20262m 2s
Serve hgvs UTA lookups from a recorded cache in tests
completed successfully:
Python CQA#2076:Pull request#667synchronizebytheferrit32
kf/659-hgvs-uta-cache
Oct 6, 20261m 27s
test: store the hgvs test cache as JSON
completed successfully:
Python CQA#2075:Commit94bb78apushedbytheferrit32
kf/659-hgvs-uta-cache
Oct 6, 20261m 25s
Serve hgvs UTA lookups from a recorded cache in tests
completed successfully:
Python CQA#2074:Pull request#667synchronizebytheferrit32
kf/659-hgvs-uta-cache
Oct 6, 20261m 46s
test: note that live hgvs cache modes need --disable-vcr
completed successfully:
Python CQA#2073:Commit03a14e2pushedbytheferrit32
kf/659-hgvs-uta-cache
Oct 6, 20261m 20s
Enforce sequence coordinate bounds
completed successfully:
Python CQA#2072:Pull request#663synchronizebytheferrit32
kf/location-bounds
Oct 6, 20264m 56s
revert: drop _from_vrs fix from location bounds branch
completed successfully:
Python CQA#2071:Commitdd353c8pushedbytheferrit32
kf/location-bounds
Oct 6, 20264m 56s
fix(translator): reject non-variation types in _from_vrs
completed successfully:
Python CQA#2070:Pull request#668openedbytheferrit32
kf/from-vrs-reject-non-variation
Oct 6, 20262m 8s
fix(translator): reject non-variation types in _from_vrs
completed successfully:
Python CQA#2069:Commit39fb5c2pushedbytheferrit32
kf/from-vrs-reject-non-variation
Oct 6, 20262m 21s
fix: resolve VRS model class via getattr in from-VRS translation (#656)
completed successfully:
Python CQA#2068:Commitbda2dddpushedbytheferrit32
main
Oct 6, 20262m 14s
fix: resolve VRS model class via getattr in from-VRS translation
completed successfully:
Python CQA#2067:Pull request#656synchronizebytheferrit32
developer-rpai:fix-489-translator-from-vrs-models
Oct 6, 20262m 5s
Change pysam dependency to >=0.24.0 (#666)
completed successfully:
Python CQA#2066:Commit1dc755bpushedbytheferrit32
main
Oct 6, 20261m 56s
Serve hgvs UTA lookups from a recorded cache in tests
completed successfully:
Python CQA#2065:Pull request#667openedbytheferrit32
kf/659-hgvs-uta-cache
Oct 6, 20261m 14s
test: explain how the hgvs cache tests work in their docstrings
completed successfully:
Python CQA#2064:Commit01c0208pushedbytheferrit32
kf/659-hgvs-uta-cache
Oct 6, 20261m 24s
test: re-record hgvs-related cassettes without NCBI sequence requests
completed successfully:
Python CQA#2063:Commit32064ffpushedbytheferrit32
kf/659-hgvs-uta-cache
Oct 6, 20261m 29s
fix: resolve VRS model class via getattr in from-VRS translation
completed successfully:
Python CQA#2062:Pull request#656synchronizebytheferrit32
developer-rpai:fix-489-translator-from-vrs-models
Oct 5, 20261m 23s
Change pysam dependency to >=0.24.0
completed successfully:
Python CQA#2061:Pull request#666openedbytheferrit32
kf/653-pysam-0.24
Oct 3, 20262m 14s
build: require pysam>=0.24.0
completed successfully:
Python CQA#2060:Commitc783e4bpushedbytheferrit32
kf/653-pysam-0.24
Oct 3, 20262m 11s
Support smallest and largest subunit mode for RLEs
completed successfully:
Python CQA#2059:Pull request#665openedbytheferrit32
kf/637-rle-subunit-mode
Oct 2, 20264m 5s
refactor(normalize): yield factors lazily in either RLE subunit mode
completed successfully:
Python CQA#2058:Commitacef36bpushedbytheferrit32
kf/637-rle-subunit-mode
Oct 2, 20263m 24s
test: parametrize RLE subunit mode tests and cover translator and SPD…
completed successfully:
Python CQA#2057:Commite467202pushedbytheferrit32
kf/637-rle-subunit-mode
Oct 2, 20262m 45s
refactor(normalize): add DEFAULT_RLE_SUBUNIT_MODE and clean-up docstr…
completed successfully:
Python CQA#2056:Commit2246997pushedbytheferrit32
kf/637-rle-subunit-mode
Oct 2, 20263m 38s
Sync from main (#664)
completed successfully:
Python CQA#2055:Commit7ce16depushedbytheferrit32
vrs/2.1
Oct 2, 20264m 0s

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Python CQA

301 workflow runs

Make the shared RLE sequence limit configurable

Make the shared RLE sequence limit configurable

fix: validate reference allele stated in HGVS expressions

Serve hgvs UTA lookups from a recorded cache in tests

test: store the hgvs test cache as JSON

Serve hgvs UTA lookups from a recorded cache in tests

test: note that live hgvs cache modes need --disable-vcr

Enforce sequence coordinate bounds

revert: drop _from_vrs fix from location bounds branch

fix(translator): reject non-variation types in _from_vrs

fix(translator): reject non-variation types in _from_vrs

fix: resolve VRS model class via getattr in from-VRS translation (#656)

fix: resolve VRS model class via getattr in from-VRS translation

Change pysam dependency to `>=0.24.0` (#666)

Serve hgvs UTA lookups from a recorded cache in tests

test: explain how the hgvs cache tests work in their docstrings

test: re-record hgvs-related cassettes without NCBI sequence requests

fix: resolve VRS model class via getattr in from-VRS translation

Change pysam dependency to `>=0.24.0`

build: require pysam>=0.24.0

Support smallest and largest subunit mode for RLEs

refactor(normalize): yield factors lazily in either RLE subunit mode

test: parametrize RLE subunit mode tests and cover translator and SPD…

refactor(normalize): add DEFAULT_RLE_SUBUNIT_MODE and clean-up docstr…

Sync from main (#664)

Workflow runs for Python CQA

301 workflow runs