Skip to content
Navigation Menu
Sign in
Appearance settings
Platform
AI CODE CREATION
GitHub Copilot
Write better code with AI
GitHub Copilot app
Direct agents from issue to merge
MCP Registry
Integrate external tools
DEVELOPER WORKFLOWS
Actions
Automate any workflow
Codespaces
Instant dev environments
Issues
Plan and track work
Code Review
Manage code changes
Code Quality
Enforce quality at merge
APPLICATION SECURITY
GitHub Advanced Security
Find and fix vulnerabilities
Code security
Secure your code as you build
Secret protection
Stop leaks before they start
EXPLORE
Why GitHub
Documentation
Blog
Changelog
Marketplace
View all features
Solutions
BY COMPANY SIZE
Enterprises
Small and medium teams
Startups
Nonprofits
BY USE CASE
App Modernization
DevSecOps
DevOps
CI/CD
View all use cases
BY INDUSTRY
Healthcare
Financial services
Manufacturing
Government
View all industries
View all solutions
Resources
EXPLORE BY TOPIC
AI
Software Development
DevOps
Security
View all topics
EXPLORE BY TYPE
Customer stories
Events & webinars
Ebooks & reports
Business insights
GitHub Skills
SUPPORT & SERVICES
Documentation
Customer support
Community forum
Trust center
Partners
View all resources
Open Source
COMMUNITY
GitHub Sponsors
Fund open source developers
PROGRAMS
Security Lab
Maintainer Community
GitHub Stars
Archive Program
REPOSITORIES
Topics
Trending
Collections
Enterprise
ENTERPRISE SOLUTIONS
Enterprise platform
AI-powered developer platform
AVAILABLE ADD-ONS
GitHub Advanced Security
Enterprise-grade security features
Copilot for Business
Enterprise-grade AI features
Premium Support
Enterprise-grade 24/7 support
Pricing
Search
/
Sign in
Sign up
Appearance settings
You signed in with another tab or window.
Reload
to refresh your session.
You signed out in another tab or window.
Reload
to refresh your session.
You switched accounts on another tab or window.
Reload
to refresh your session.
Dismiss alert
{{ message }}
jrflab
modules
Repository navigation
Code
Issues
1
(1)
Pull requests
Actions
Security and quality
Insights
More
items
modules
Public
Notifications
You must be signed in to change notification settings
Fork
13
(
13
)
Star
18
(
18
)
You must be signed in to star a repository
About
MSKCC Reis-Filho Lab pipeline thingy
www.mskcc.org/research-areas/labs/jorge-reis-filho/overview
Resources
Readme
Activity
Custom properties
Stars
18
stars
Watchers
6
watching
Forks
13
forks
Report repository
master
Branches
Tags
Go to file
Code
Open more actions menu
Latest commit
History
5,246 Commits
5,246 Commits
Folders and files
Name
Name
Last commit message
Last commit date
aligners
aligners
bam_tools
bam_tools
clonality
clonality
conda_env
conda_env
config
config
contamination
contamination
copy_number
copy_number
db
db
default_yaml
default_yaml
export
export
external
external
fastq_tools
fastq_tools
genome_inc
genome_inc
isoforms
isoforms
ploidy
ploidy
qc
qc
recurrent_mutations
recurrent_mutations
reference
reference
rnaseq
rnaseq
scripts
scripts
signatures
signatures
snp6
snp6
summary
summary
sv_callers
sv_callers
variant_callers
variant_callers
vcf_tools
vcf_tools
virus
virus
.gitignore
.gitignore
.gitmodules
.gitmodules
.travis.yml
.travis.yml
Makefile
Makefile
Makefile.inc
Makefile.inc
README.md
README.md
config.inc
config.inc
View all files
Repository files navigation
README
More
items
modules
About
MSKCC Reis-Filho Lab pipeline thingy
www.mskcc.org/research-areas/labs/jorge-reis-filho/overview
Resources
Readme
Activity
Custom properties
Stars
18
stars
Watchers
6
watching
Forks
13
forks
Report repository
Releases
Packages
Used by
Contributors
Languages
You can’t perform that action at this time.
