All pull requests

Pull requests

• POC: nextclade dataset shown on website via helm template

  deploymentpreviewwebsite
  #7660·anna-parker opened Oct 30, 2026Contributor·3 tasks·

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• feat(website): add customDisplay variant for nextclade dataset info

  deploymentwebsite
  #7659·maverbiest opened Oct 30, 2026Contributor·3 tasks·

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• chore(website): Pagination component to replace MUI pagination

  previewpreview-persistentwebsite
  #7658·tombch opened Oct 30, 2026Collaborator·3 tasks done·

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  6

• refactor(website): Make customDisplay.type an enum

  website
  #7657·maverbiest opened Oct 30, 2026Contributor·3 tasks·

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  4

• feat!(prepro): remove spacing around hyphens if submitted with spaces

  preprocessingpreview
  #7655·anna-parker opened Oct 30, 2026Contributor·3 tasks done·

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  3

• chore(website): defer React 19 dependency updates

  #7654·snehasaisneha opened Oct 30, 2026Member·

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  2

• feat(prepro): add nextclade server, dataset, and tag to processed output

  deploymentpreprocessing
  #7651·maverbiest opened Oct 30, 2026Contributor·3 tasks·

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• feat(deployment): upgrade to RhyDB 0.17.3 and LAPIS 0.9.1, preprocess via RhyDB python bindings

  deployment
  #7640·taepper opened Oct 28, 2026Contributor·

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• Poc/lapis auth uni

  authbackenddeploymentpreviewwebsite
  #7626·andreashille opened Oct 27, 2026Contributor·3 tasks·

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  1

• feat(backend): add Loculus-owned identity and JIT provisioning

  backend
  #7621·snehasaisneha opened Oct 27, 2026Member·

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• feat(website): step-by-step submit confirmation incl. author first/last name check

  previewpreview-persistentwebsite
  #7615·theosanderson-agent opened Oct 26, 2026Collaborator·

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  11

• feat(backend): [do not merge] Initial v1 groups API

  backend
  #7613·tombch opened Oct 25, 2026Collaborator·3 tasks·

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  2

• feat(prepro): Add suggestions for option fields when option is unknown

  preprocessing
  #7611·tombch opened Oct 23, 2026Collaborator·3 tasks·

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  5

• feat(prepro): reintroduce improved errors and warnings from host validation

  preprocessingpreview
  #7605·maverbiest opened Oct 23, 2026Contributor·3 tasks done·

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  17

• feat(backend)!: post-prepro-lease PR cleanup - remove EnqueueMissingPreprocessingEntriesTask task

  backend
  #7603·anna-parker opened Oct 23, 2026Contributor·3 tasks·

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• chore(deps): bump react-dom and @types/react-dom in /website

  dependenciesjavascript
  #7573·dependabot[bot] opened Oct 21, 2026Bot·

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  6

• feat!(backend, deposition): support accession-scoped external metadata

  backenddepositionpreviewupdate_db_schema
  #7556·anna-parker opened Oct 19, 2026Contributor·6 tasks done·

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  1

  20

• feat!(backend, preprocessing): lease-based preprocessing work queue

  backendpreprocessingupdate_db_schema
  #7551·clonder opened Oct 18, 2026Contributor·3 tasks done·

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  38

• feat(backend): [DEMO] add v2 group endpoints

  backend
  #7549·maverbiest opened Oct 15, 2026Contributor·2/2·

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  1

• refactor(backend): [DEMO] Experimenting with v2 API in backend

  backend
  #7540·maverbiest opened Oct 14, 2026Contributor·1/2·

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  2

• feat(website): Draft SeqSets and find accessions via website

  website
  #7538·tombch opened Oct 14, 2026Collaborator·3 tasks·

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• chore: add Dockerfile and threat model for Anthropic OSS Scanner

  #7534·theosanderson-agent opened Oct 11, 2026Collaborator·

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• feat(raw-reads,prepro): centralize error logging in raw reads processing service

  preprocessing
  #7533·maverbiest opened Oct 9, 2026Contributor·3 tasks·

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  1

  6

• fix(deposition): stop warning about directories and binaries in webin-cli output

  deposition
  #7532·corneliusroemer opened Oct 9, 2026Contributor·2 tasks done·

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  1

  3

• feat(website): RU prompt for individual sequence download

  previewwebsite
  #7506·theosanderson-agent opened Oct 7, 2026Collaborator·

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  4