self-assembly

A Forth JIT & AOT compiler designed for self-assembling and self-bootstrapping.

Set of tools to generate a multi-eGO force field to perform molecular dynamics simulations

This code allows users to simulate ions confined between material surfaces that are nanometers apart, and extract the associated ionic structure.

AI models for prediction and design of novel self-assembling peptides

This code trains and implements a stochastic physics-informed neural ordinary differential equation (SPINODE) framework on a directed colloidal self-assembly test case.

Developed and simulated a randomly scattered collective of robots with sensors to self-assemble into any given connected shape, using gradient information derived from the desired shape.

This repository contains the software used in the papers "Self-Replicating Machines in Continuous Space with Virtual Physics" and "Self-Replication and Self-Assembly for Manufacturing" (see self-replicating-machines.pdf and self-replication-and-self-assembly.pdf).

Model self assembly of particles using Inverse Gaussian Noise

Material for the 'Trieste Next' popular science festival. SISSA group 2023/2024.

This code trains and implements a characterization framework based on deep learning for characterizing structural states of colloidal self-assembly systems.

A generalized biochemical simulation framework

This repository contains the post-processed data and MATLAB scripts used to reproduce all figures presented in the manuscript and Supplementary Information (SI) of: "Nonequilibrium Self-Assembly Control by the Stochastic Landscape Method". Authors: Michael Faran and Prof. Gili Bisker.

Simulation software for patchy particles in 2d

Python library and Julia scripts to simulate several Flexible Chain Walker (FCW) models.

Ranking seven real programmable-matter technologies (DNA nanotech, modular robots, acoustic assembly, and more) against the 'utility fog' dream — and the L² scaling law that explains why none has closed the gap. Article, figures, scripts, and scored research.

Square Lattice Assembly Model

A WebGPU primordial-soup simulation with pass criteria fixed before the runs: the soup assembles, the vesicle never closes, and the cause is measured.

Simulation of 2D self-assembly driven by depletion force

MATLAB particle-based simulations of cellular self-assembly: soft, adhesive, self-propelled (Ornstein-Uhlenbeck) cells in a packed gel medium, in 2D and 3D. Scans motility, adhesion, packing fraction, persistence and medium stiffness. Code for 'Biophysical Design Space for Cellular Self-assembly and Dynamics'.