seqfish

Here are 4 public repositories matching this topic...

HaojiaWu / CellScopes.jl

A Julia package for single cell and spatial data analysis

bioinformatics data-viz scrna-seq starmap julia-package single-cell-omics spatial-transcriptomics scatac-seq merfish visium seqfish xenium cartana slideseq

Updated Aug 7, 2025
Julia

A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and statistically enriched covariation of gene programs between interacting cell types from the neighborhood.

scrna-seq scrna-seq-data scrnaseq nico scrna-seq-analysis spatial-transcriptomics niche-modelling merfish seqfish niche-covariation

Updated Sep 25, 2026
Jupyter Notebook

alegroaz / FISHsuite

Star

Open-source tools to design, run and analyse seqFISH+ experiments in whole animals: FISHencode, FISHflow, FISHmap. Code coming soon.

image-analysis microscopy c-elegans fluidics spatial-transcriptomics seqfish

Updated Oct 19, 2026

amnahsiddiqa / imaging-spatial-tx-tools

Star

Curated, weekly auto-updated list of tools for imaging-based in situ spatial transcriptomics (Xenium, CosMx, MERFISH/MERSCOPE, seqFISH, STARmap, ISS)

bioinformatics awesome-list spatial-transcriptomics merfish in-situ-sequencing seqfish merscope xenium cosmx

Updated Nov 9, 2026
Python

Add this topic to your repo

To associate your repository with the seqfish topic, visit your repo's landing page and select "manage topics."

Learn more

Navigation Menu