Move specimen module to customModules repository - #281
Merged
Merged
Conversation
SVN r54982 |2017-11-09 17:40:11 +0000
SVN r55556 |2017-12-19 17:44:29 +0000
SVN r55560 |2017-12-19 18:45:28 +0000
Remove unnecessary calls to 'setSourceTransformer(text -> text)' SVN r56307 |2018-02-02 19:57:24 +0000
SVN r58166 |2018-05-13 21:43:41 +0000
SVN r58189 |2018-05-14 20:32:31 +0000
SVN r58244 |2018-05-17 14:49:09 +0000
SVN r59267 |2018-07-17 18:16:50 +0000
…licking project menu expand link) SVN r60690 |2018-10-17 17:40:40 +0000
-- Update for November 2018 -- Now scanning .tf and .tfvars files (Terraform) -- Deliberately leaving out SNPRC module (moving to Git very soon) SVN r61088 |2018-11-13 00:57:49 +0000
-- Update for November 2018 -- Now scanning .tf and .tfvars files (Terraform) -- Deliberately leaving out SNPRC module (moving to Git very soon)
SVN r61403 |2018-12-11 19:04:37 +0000
SVN r61675 |2019-01-04 23:45:39 +0000
SVN r61964 |2019-01-22 20:01:31 +0000
…is present before trying to click it. SVN r62140 |2019-01-30 15:06:23 +0000
SVN r62515 |2019-02-18 17:41:40 +0000
SVN r62596 |2019-02-21 01:45:12 +0000
SVN r62619 |2019-02-21 22:58:45 +0000
…f you only care about the content of the alert message and not about format. SVN r62627 |2019-02-22 15:11:54 +0000
…ces. SVN r62681 |2019-02-26 15:35:29 +0000
…re put in the Study Specimens sample set. SVN r62819 |2019-03-05 22:12:27 +0000
SVN r63550 |2019-05-02 22:32:50 +0000
SVN r63739 |2019-05-17 17:11:12 +0000
Will allow us to run against CAS-only servers in the future Currently requires password authentication to be enabled on the server SVN r63743 |2019-05-17 18:27:46 +0000
- use raw string in labkey:radio currentValue so Objects.equals in RadioTag.isChecked will return true - add expected error message to test fix SampleSetTest - expected audit log message has changed
fix AliquotTest - use raw string in labkey:radio currentValue so Objects.equals in RadioTag.isChecked will return true - add expected error message to test fix SampleSetTest - expected audit log message has changed
Conflicts: api/src/org/labkey/api/mcp/McpService.java experiment/src/org/labkey/experiment/ExperimentModule.java specimen/src/org/labkey/specimen/actions/SpecimenController.java
Original PR: LabKey/platform#7749 #### Rationale We can improve our parameter validation #### Changes - New test coverage - Assorted scoping checks
Conflicts: issues/src/org/labkey/issue/IssuesController.java
Conflicts: announcements/src/org/labkey/announcements/AnnouncementsController.java announcements/src/org/labkey/announcements/ToursController.java announcements/src/org/labkey/announcements/announcementThread.jsp announcements/src/org/labkey/announcements/model/AnnouncementManager.java api/src/org/labkey/api/data/TableViewForm.java api/src/org/labkey/api/exp/api/ExperimentService.java api/src/org/labkey/api/util/XmlBeansUtil.java assay/api-src/org/labkey/api/assay/nab/view/MultiGraphAction.java core/src/org/labkey/core/CoreModule.java list/src/org/labkey/list/controllers/ListController.java list/src/org/labkey/list/model/ListAuditProvider.java study/src/org/labkey/study/StudyModule.java study/src/org/labkey/study/controllers/DatasetController.java study/src/org/labkey/study/model/ParticipantGroupManager.java studydesign/src/org/labkey/studydesign/StudyDesignModule.java
Conflicts: src/org/labkey/test/tests/AttachmentFieldTest.java src/org/labkey/test/tests/nab/NabAssayTest.java
Conflicts: announcements/src/org/labkey/announcements/AnnouncementsController.java api/src/org/labkey/api/data/TableViewForm.java api/src/org/labkey/api/security/permissions/AbstractContainerScopingTest.java assay/src/org/labkey/assay/AssayController.java core/src/org/labkey/core/CoreController.java core/src/org/labkey/core/admin/AdminController.java mothership/src/org/labkey/mothership/MothershipController.java pipeline/src/org/labkey/pipeline/api/PipelineStatusManager.java query/src/org/labkey/query/QueryModule.java study/src/org/labkey/study/model/ParticipantGroupManager.java studydesign/src/org/labkey/studydesign/StudyDesignController.java studydesign/src/org/labkey/studydesign/StudyDesignModule.java studydesign/src/org/labkey/studydesign/model/TreatmentManager.java
Conflicts: api/src/org/labkey/api/data/TableViewForm.java api/src/org/labkey/api/webdav/FileSystemResource.java specimen/src/org/labkey/specimen/actions/SpecimenController.java
Conflicts: assay/src/org/labkey/assay/actions/DeleteAction.java core/src/org/labkey/core/CoreController.java issues/src/org/labkey/issue/IssuesController.java
Original PR: LabKey/platform#7787
Original PR: LabKey/testAutomation#3068
Original PR: LabKey/platform#7888 ## Rationale - Clean up some warnings and unused methods in `JspBase` - Migrate uses of Commons Collections `Bag` to `MultiSet`. MultiSet is the replacement for Bag that's fully compatible with the Collection contract. Note: Originally this was meant to update our CSPs to use report-to exclusively (LabKey/internal-issues#900), but we'll revisit that after confirming support for this directive on TeamCity.
Original PR: LabKey/platform#7889 ## Rationale Move a few classes from study into specimen. Also, on the study summary page, stop displaying a "Manage Study" link to Specimen Coordinators when requests are disabled. This avoids leading them to a Manage Study page that's completely blank. #### Tasks - [x] Dev - [x] Claude code review - [x] Code review - [x] Manual testing - automated testing should be sufficient - [x] TeamCity review and merge
Original PR: LabKey/platform#7969 ## Rationale We no longer support SQLServer as a primary DB ## Changes - Remove schema upgrade scripts - Remove SQLServer conditional code - Remove `SupportedDatabases` in `module.properties` - Remove uses of `PostgresOnlyTest`
Original PR: LabKey/platform#8073 ## Rationale Push containers into `ExperimentService` retrieval methods for performance and reliability. LabKey/kanban#1969
This was referenced Sep 25, 2026
labkey-adam
approved these changes
Sep 25, 2026
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Rationale
https://github.com/LabKey/internal-issues/issues/877
Related Pull Requests
Changes